GgaEX6042491 @ galGal4
Exon Skipping
Gene
ENSGALG00000010943 | SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr7:19124319-19128633:+
Coord C1 exon
chr7:19124319-19124473
Coord A exon
chr7:19126510-19126683
Coord C2 exon
chr7:19128511-19128633
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTGAATATTTTTCTTACAGGCT
3' ss Score
7.98
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GCTGTGTACAGAGGTTCAAGTGCTGTCAAGTAAGCATAGAAGAAGGGAGAGGAAAGCAGTGGTGGAACCTTAGAAAAACATGCTTCAGAATTGTTGAACACAACTGGTTTGAGACTTTCATTGTCTTTATGATTCTCCTCAGCAGTGGAGCTCTG
Seq A exon
GCTTTTGAAGATATATATATTGAACAGCGCAAAACTATCAAGACCATGCTGGAATATGCTGACAAAGTCTTCACTTACATCTTCATTCTGGAAATGCTGCTGAAGTGGGTGGCCTATGGCTATCAAACATACTTTACTAATGCCTGGTGCTGGCTGGACTTCCTGATTGTTGAT
Seq C2 exon
GTCTCTTTGGTTAGCTTAACAGCAAATGCATTGGGTTACTCTGAACTTGGTGCCATTAAGTCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCACGATTTGAAGGCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'21-24,'21-21,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGTTCAAGTGCTGTCA
R:
TCGTGACAAGGCTCTTAGAGGT
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]