DreEX6029427 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52305401-52311228:-
Coord C1 exon
chr2:52311074-52311228
Coord A exon
chr2:52310404-52310577
Coord C2 exon
chr2:52305401-52305523
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATGTTATATCTTTTGGACAGGCT
3' ss Score
6.04
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TCTGCATGCAGCGCTGTAAGTGTTGTAATATAAACACAACGCAAGGTCTGGGACAGATGTGGTGGAGGCTGAGGAAGACGTGCTATCAAATTGTGGAGCATAGCTGGTTTGAGACCTTCATCATCTTTATGATCCTCCTCAGCAGCGGAGCTCTG
Seq A exon
GCTTTTGAAGACATTTACATCGAACAGCGGAAGGTGGTGAAGGTGGTGTTGGAGTATGCTGACAAGGTTTTCAGCTACATCTTTGTACTGGAGATGTTTCTGAAGTGGATTGCGTACGGATTTAAGAAATACTTCACTAATTACTGGTGCTGGCTGGACTTCCTGATCGTGGAT
Seq C2 exon
GTGTCTTTGATTAGTTTGGTTGCGAACTCCCTTGGCTACTCTGATTTCGGGGCCATCAAGTCTTTGAGGACTCTCAGAGCTCTGCGACCCCTGAGGGCCCTATCTAGATTTGAAGGAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(22.4=84.6)
A:
PF0052026=Ion_trans=PU(17.3=67.2)
C2:
PF0052026=Ion_trans=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGCTGTAAGTGTTGTAA
R:
AATCTAGATAGGGCCCTCAGG
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]