RnoEX6038199 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128183979-128197871:-
Coord C1 exon
chr8:128197717-128197871
Coord A exon
chr8:128186360-128186533
Coord C2 exon
chr8:128183979-128184101
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCGCCTGTCTTGCCCGCAGGCC
3' ss Score
12.4
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGCGTCCGACGCTGTCCCTGCTGCATGGTAGACACAACCCAGTCCCCAGGGAAGGTCTGGTGGCGATTGCGCAAGACCTGCTACCGCATCGTGGAGCACAGCTGGTTCGAGACTTTCATCATCTTCATGATCCTGCTCAGCAGTGGAGCGCTG
Seq A exon
GCCTTCGAGGACATCTACCTGGAGGAGCGGAAGACCATCAAGGTTCTGCTGGAGTACGCGGACAAGATGTTCACCTACGTCTTTGTGTTGGAGATGCTGCTCAAGTGGGTGGCCTACGGCTTCAAGAAGTACTTCACCAACGCCTGGTGCTGGCTGGACTTCCTGATTGTGGAC
Seq C2 exon
GTCTCGCTGGTCAGCCTCGTGGCAAACACCTTAGGCTTCGCCGAAATGGGTCCCATCAAGTCACTGAGGACACTGCGTGCACTTCGACCCCTGAGGGCCTTGTCGAGATTTGAGGGCATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'29-32,'29-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(16.8=84.6)
A:
PF0052026=Ion_trans=PU(17.0=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACACAACCCAGTCCCCAG
R:
GCATGCCCTCAAATCTCGACA
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]