BtaEX6093435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12031290-12045548:-
Coord C1 exon
chr22:12045394-12045548
Coord A exon
chr22:12035186-12035359
Coord C2 exon
chr22:12031290-12031412
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGCCCACCCTGGTCTGCAGGCC
3' ss Score
6.25
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGTGTCCGCCGCTGTCCCTGCTGCACCGTGGACACCACACAGGCCCACGGGAAGGTCTGGTGGAGGCTGCGCAAGACCTGCTACCGCATCGTGGAGCACAGCTGGTTCGAGACGTTCATCATCTTCATGATCCTGCTCAGCAGTGGCGCACTG
Seq A exon
GCCTTTGAGGACATCTACCTGGAGGAACGGAAGACCATCAAGGTCCTGCTGGAGTACGCCGACAAGATGTTCACCTACGTCTTCGTGCTGGAGATGCTCCTCAAGTGGGTGGCCTACGGCTTCAAGAAGTACTTCACCAACGCCTGGTGCTGGCTTGATTTCCTCATCGTGGAC
Seq C2 exon
GTCTCGCTGATCAGCCTGGTGGCCAACGCCCTGGGCTTTGCTGAGATGGGCCCCATCAAGTCACTGCGGACCTTGCGTGCGCTCAGACCCCTGCGAGCCCTGTCACGATTTGAGGGCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(16.7=84.6)
A:
PF0052026=Ion_trans=PU(17.0=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCACCGTGGACAC
R:
CCTCAAATCGTGACAGGGCTC
Band lengths:
251-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]