GgaEX6018321 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5574372-5591605:+
Coord C1 exon
chr2:5574372-5574526
Coord A exon
chr2:5578251-5578424
Coord C2 exon
chr2:5591483-5591605
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCAATATTTTGCACTTCCAGGCT
3' ss Score
7.94
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTTGTGTGCGGTTCTTCCCATGCTGTTCCGTGGACATCTCAAAATTTCCAGGCAAAATTTGGTGGAGGCTCCGGAAGACTTGCTACAGGATTGTTGAACACAACTGGTTTGAGACTTTCATCATATTCATGATCTTGCTGAGCAGTGGAGCCCTG
Seq A exon
GCTTTTGAAGATATTTACCTTGAAGATCGAAAAAACATAAAAACCATGCTGGAATATGCTGACAAAATATTCACTTACATCTTTGTATTGGAAATGCTCCTGAAATGGGTGGCTTATGGCTTCAAGAAGTATTTCACCAACGCCTGGTGCTGGCTTGACTTCCTCATTGTCGAT
Seq C2 exon
GTCTCCTTAATCAGCCTCATAGCCAACACTCTTGGATACTCCGAGATGGGTCCCATTAAATCCCTCAGGACCCTCCGAGCTCTGAGACCACTGAGAGCGTTGTCACGGTTTGAAGGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'24-31,'24-28,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(16.4=84.6)
A:
PF0052026=Ion_trans=PU(17.0=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTCCCATGCTGTTCCGT
R:
AACGCTCTCAGTGGTCTCAGA
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]