BtaEX6090422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54427967-54432590:-
Coord C1 exon
chr19:54432401-54432590
Coord A exon
chr19:54429660-54429737
Coord C2 exon
chr19:54427967-54428066
Length
78 bp
Sequences
Splice sites
3' ss Seq
GAATTGTTTCTTCTCTTCAGGGG
3' ss Score
9.05
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTCACCGTGGCTGCTGTTGGCCCCTCTCCTGTCCCCTGCGGTCCCTGTGGTCACCTCGCCTCCATGCTGCCTGTGTGCGGAGGGCGTGCATCGCTTCCAGTGGATCAGAAACCTGGTTCCAGAGTTTGGCGTCTCCAGCTCTCATGTCAGGGTGCTTTCTTCCCCAGCAGAGTTTTTTGAGCTCATGAAG
Seq A exon
GGGCAGATAAAAGTAGCCAAGAGGCGGGTCGTGATGGCATCCCTCTACCTGGGGATAGGTCCTCTGGAACAGGAACTG
Seq C2 exon
GTGGATTGCCTAGAAAGCACTCTAGAAAAATCACTCCAGGCGAAGTTTCCTTCCGGCCTCAGGGTGTCCATCCTCTTGGACTTCACGAGGGGCTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-'12-5,'12-3,13-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(0.6=1.6)
A:
PF130911=PLDc_2=FE(15.5=100)
C2:
PF130911=PLDc_2=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGCTTCCAGTGGATCAG
R:
AAGAGGATGGACACCCTGAGG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]