DreEX6070292 @ danRer10
Exon Skipping
Gene
ENSDARG00000075857 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr12:34147930-34150829:-
Coord C1 exon
chr12:34150628-34150829
Coord A exon
chr12:34148735-34148812
Coord C2 exon
chr12:34147930-34148026
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTCTGTTTGCACAGGCT
3' ss Score
8.8
5' ss Seq
CTGGTACAT
5' ss Score
4.22
Exon sequences
Seq C1 exon
GTCTGCGGTGCTGCTTTTGGCTCCTCTCCTGGCAGAGGCAGATTCAGCACCCCTGGCCTCCTCCAGACCTCCAGGCTTCACTGGCGTCGAGAGCCTTCACTCCCGCTTCCACTGGATGGCGGATCATGTACCGGCTTTCAAAGTCCCTGGGGGCCACATTCGCGTCCTCCACTCACCTGATGAGTTTTATCAAGCCATGAAG
Seq A exon
GCTCGTATCAAGACAGCCAAGAGTCGTGTGGTGATGGCATCTCTGTATCTGGGCACAGGACCACTAGAGCAAGACCTG
Seq C2 exon
GTTGATTGCATGGAAGAAGCATTAGAGCGCTCACAGGAAGATCACACACCTGATCTCAAAGTGTCGTTTCTGCTGGATTATACCAGAGGCTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075857-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(0.6=1.5)
A:
PF130911=PLDc_2=FE(15.9=100)
C2:
PF130911=PLDc_2=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGACCTCCAGGCTTCA
R:
CCTGTGAGCGCTCTAATGCTT
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]