GgaEX0010265 @ galGal3
Exon Skipping
Gene
ENSGALG00000007181 | PGPS1_CHICK
Description
NA
Coordinates
chr18:9779933-9782259:-
Coord C1 exon
chr18:9782070-9782259
Coord A exon
chr18:9781096-9781173
Coord C2 exon
chr18:9779933-9780032
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCTGCTACTCTCAGGTG
3' ss Score
8.56
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCATCATGGCTTCTCCTAGCCCCACTGCTCACCCCGCCGGTTCCTGTGATCACAGCCATGCCTTGCTCCCTTTGCCCAGAAGGAGCACACAGGTTCCAGTGGATCAGGAATCTGGTTCCAGAGTTTGGGATCTCCAGCTCACATGTCAAGGTGCTTTCTTCTCCGGCTGAATTCTATGAACTCTTGAAG
Seq A exon
GTGCAGATAAAAACAGCCAAGCAGCGAGTGGTGATGGCTTCACTATACCTGGGAACAGGGCTCCTGGAACAGGAGCTG
Seq C2 exon
GTGAATTGCTTAGAAGAAACACTGGAGAAATCATTGCAAGCAAATGAATCACCAAACCTCAGAGTTTCCATTCTTCTTGACTACACCAGGGGATCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(0.6=1.6)
A:
PF130911=PLDc_2=FE(15.4=100)
C2:
PF130911=PLDc_2=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGCACACAGGTTCCAG
R:
TGGAAACTCTGAGGTTTGGTGA
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]