RnoEX0065192 @ rn6
Exon Skipping
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107005272-107009851:+
Coord C1 exon
chr10:107005272-107005461
Coord A exon
chr10:107008047-107008124
Coord C2 exon
chr10:107009752-107009851
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTCTCCTCTTTCCAGGGG
3' ss Score
10.9
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTCACCATGGCTGTTACTGGCTCCCTTGCTGTCACCAACTGTTCCTCAGGTCACTTCCCCACCTTGCTGCCTATGTCCCGAGGGTGTGCACCGGTTCCAGTGGATCAGAAACCTGGTCCCAGAATTTGGAGTCTCCAGCTCTCATGTAAGGGTGCTGTCTTCCCCTGCAGAGTTCTTCGAGCTCATGAAG
Seq A exon
GGGCAGATAAAAATAGCCAAGAGGCGAGTTGTGATGGCATCCCTTTACTTGGGGACAGGACCTTTGGAACAGGAACTG
Seq C2 exon
GTGGATTGTCTGGAAAGTTCTCTAGAAAAGTCACTACAAGCGAAGTTTCCTTCCGACCTCAAGGTCTCCATTCTCCTGGACTTCACCAGGGGCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(0.6=1.6)
A:
PF130911=PLDc_2=FE(15.6=100)
C2:
PF130911=PLDc_2=FE(20.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCAGAAACCTGGTCCCA
R:
TGGTGAAGTCCAGGAGAATGG
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]