HsaEX0046866 @ hg38
Exon Skipping
Gene
ENSG00000087157 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr17:78392476-78398351:+
Coord C1 exon
chr17:78392476-78392665
Coord A exon
chr17:78396308-78396385
Coord C2 exon
chr17:78398252-78398351
Length
78 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTCTCCTCTCTCAGGGG
3' ss Score
8.75
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTCACCATGGCTGTTATTGGCTCCCTTGCTGTCCCCAGCTGTTCCCCAGGTCACCTCCCCACCTTGCTGCCTGTGTCCAGAAGGCGTGCACCGGTTCCAGTGGATCAGAAACCTGGTTCCAGAATTTGGAGTCTCCAGTTCTCACGTTAGGGTGCTTTCTTCCCCGGCAGAGTTTTTCGAGCTCATGAAG
Seq A exon
GGGCAGATAAGAGTAGCCAAGAGGCGGGTCGTGATGGCATCCCTCTACCTGGGGACAGGTCCTTTGGAACAGGAGCTG
Seq C2 exon
GTGGACTGCCTGGAAAGTACTCTAGAAAAGTCACTCCAAGCAAAGTTTCCTTCAAATCTCAAGGTCTCCATTCTCTTAGACTTCACGCGGGGCTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087157_MULTIEX1-5/16=4-6
Average complexity
S*
Mappability confidence:
94%=100=94%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.019 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(14.7=35.9)
A:
PF130911=PLDc_2=FE(15.6=100)
C2:
PF130911=PLDc_2=FE(20.6=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATCAGAAACCTGGTTCCA
R:
CCCCGCGTGAAGTCTAAGAGA
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development