BtaEX6090425 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54413996-54426110:-
Coord C1 exon
chr19:54425932-54426110
Coord A exon
chr19:54422443-54422964
Coord C2 exon
chr19:54413996-54414144
Length
522 bp
Sequences
Splice sites
3' ss Seq
TCTGCCGTGTCTCCCTCTAGGTG
3' ss Score
13.82
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TGCAAACCTGAGTGACTCCTACTTCACCAACCGGCAGGACCGCTACGTGTTCTTGCAGGACTGTCCCGAGATCGCCGACTTCTTCACGGAGCTGGTGGACGCAGTAGGGGACGTGTCCCTGCAGCTGCAGGGGGACGACACTGTGCAGATGGTCGAGGGGATGGTGCACCCTTACAAAG
Seq A exon
GTGACCGGGCTGCGTATTGCAGGGCAGCCAATAAGAGGGTCATGGACGTGATCAACTCCGCCAGGATGCGCCAGCAGATGCTGCACGCCCAGACCTTCCACAGCGACCCCCTCCTGACCCAGGAGGACGCCGCAGCTGCTGGAGACCGGAGGCCGGCCCCCGACACCTGGATCTACCCCCTGATCCAGATGAAGCCCTTTGAGATTCAGATCGATGAGATTGTCACCGAGACCCTGCTGACAGAGGCCGAGCGAGGGGCTAAGGTCTATCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTCTTGGGCACGCGGGCCGAGTACCAGATCCTGCTGGCCTCGCCGGAGGTGAACGGCTTCTTCGGGGCCAAGGGGGTGGCGGGCGCCATCCCGGCCGCCTACGTGCACATCGAGCGGCAGTTCTACAGTGAGGTGTGCAGCCTGGGGCAGCAGGAGCGGGTGCAGCTGCAGGAATACTGGCGCAGGGACTGGACGTTCCACGCCAAAG
Seq C2 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGTCTCACGTTGATTGGCTCTCCTAATTTTGGGTACAGGTCGGTTCACCGGGACCTGGAGGCCCAGATCGCTATCGTCACGGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-'20-13,'20-11,22-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(22.4=59.0)
A:
PF130911=PLDc_2=PU(67.1=65.1)
C2:
PF130911=PLDc_2=FE(28.8=100)
Main Skipping Isoform:
ENSBTAT00000000897fB5167
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACCTGAGTGACTCCTAC
R:
CTGCAGGGCTCGGCTCTC
Band lengths:
313-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]