DreEX0006697 @ danRer10
Exon Skipping
Gene
ENSDARG00000075857 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr12:34115730-34127766:-
Coord C1 exon
chr12:34127588-34127766
Coord A exon
chr12:34118360-34118775
Coord C2 exon
chr12:34115730-34115805
Length
416 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTTTATTCTACCAGGCA
3' ss Score
8.41
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
GGCCAATCTGAGCGACTCCTACTTCACCAATCGGCAGGATCGTTATGTTCTTCTGGAGGACTGCAAGGAAGTTGCTGATTTCTTTGCTGAACTGGTTGGAGCCGTGGGTGACGTGTCAATGCAGCTCCTGCCTGACAACAGTGTGGAGATGATGGAGGGAAGGGTGCATCCTTACAAAG
Seq A exon
GCAACAGAGCAGATTTTTCAGAATCGGCCCAGAGACGGATCATGGAGGTGGTGAACACTGCCCGCATCCGACAAAGCATGCTAAAAACGGAATGCTCCGACCATCCAGACTCAAACGGGACATCGCCAAACGACACCTGGATCTTTCCCTTGGTGCAAATGAAACCTCTAGGCATCCATCTAGATGAACAAGTGACCAAACGACTGCTTACAGAGGCTGGTGGAGATGCTGTGGTTTACCTGACGTCGGGCTACTTCAACCTGACACGCACATACATGCAGCTGGTTTTAGGCGCAGAGGCAGACTATCGTATTCTTATGGCCTCTCCTGAGGTTAATGGGTTTTTTGGAGCCAAAGGAGTAGCTGGGGCAATTCCAGAGGCCTACGTTCACCTCGCCCGGCAGTTCTACAATAAG
Seq C2 exon
GTGTGTCAGCTTGGCCAACAGAGTCGTGTCCACTTGCATGAATACCATCGCCCTGATTGGACGTTTCATGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075857-'8-12,'8-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(21.0=54.1)
A:
PF130911=PLDc_2=PU(46.7=51.1)
C2:
PF130911=PLDc_2=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAATCTGAGCGACTCCTA
R:
TTTTGCATGAAACGTCCAATCAGG
Band lengths:
254-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]