GgaEX1043258 @ galGal4
Exon Skipping
Gene
ENSGALG00000007181 | PGS1
Description
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHN9]
Coordinates
chr18:10099526-10107524:-
Coord C1 exon
chr18:10107346-10107524
Coord A exon
chr18:10106368-10106901
Coord C2 exon
chr18:10099526-10099668
Length
534 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGGTTTTCCTGTAGGAG
3' ss Score
10.61
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGCAAACCTGAGTGATTTGTACTTCACCAATCGTCAGGACCGCTATGTTCTCCTGCAGGACTCTCCTGAGATTGCAGACTTCTTCACGGAGCTAGTGGATGCAATTGGAGATGTGTCTCTGCAGCTACAGCAAGATGATACAGTCCAGATGATGGAGGGGATGGTACACCCCTACCAAG
Seq A exon
GAGATAAGGTGAGATACTGTGAGATAGCAAATCAAAGAGTGATGGAAGTAATCGACTCTGCCAGGACACGACAAGAACTCCTTCATGCAAAGACTTTCCACAGCAGCCAGCAAGGCAGCTCCATGTTACCCCAGCATGACTCTGAAGCATCTGAGGGTCTGAAACCAGAACCTGACACGTGGATCTATCCCTTAATCCAAATGAAACCTTTTGGGATTCAAATAGATGAGATGGTCACAGAGACATTGCTGACAGAGGCTGAACGAGATGCCAAGATATACCTCACCACGGGCTACTTCAACCTGACACAAGCTTACATGGACCTCATTCTGGGCACTAGGGCAGAATATCGGATTCTTCTGGCCTCACCAGAGGTGAATGGCTTTTTTGGTGCCAAAGGGGTGGCAGGTGCCATCCCTTCTGCCTATGTTTACATAGAACACCAGTTTTACAATGAGGTCTGCTGCCTTCACCAGCAGGAGAGGGTCCAGCTGCAGGAGTACTCCAGGGCTGGATGGACTTTCCATGCCAAAG
Seq C2 exon
GAGCAGGAGCAGCTTTACCTCTGCTCAGGTGTGGTGTCATCATCAACGTTTGAGCAGCCAAGTCGGCATGTGAAGCTGTGGGTGAAATTGGTAACGCCTCTGATCAAGAATTTCTTTTGAAAGAAGCAGAGTTGCAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.084 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(22.8=60.7)
A:
PF130911=PLDc_2=PU(63.9=55.3)
C2:
PF130911=PLDc_2=PD(3.2=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACCTGAGTGATTTGTACT
R:
GCAACTCTGCTTCTTTCAAAAGA
Band lengths:
314-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]