GgaEX1043258 @ galGal3
Exon Skipping
Gene
ENSGALG00000007181 | PGPS1_CHICK
Description
NA
Coordinates
chr18:9774147-9778768:-
Coord C1 exon
chr18:9778590-9778768
Coord A exon
chr18:9777612-9778145
Coord C2 exon
chr18:9774147-9774295
Length
534 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGGTTTTCCTGTAGGAG
3' ss Score
10.61
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGCAAACCTGAGTGATTTGTACTTCACCAATCGTCAGGACCGCTATGTTCTCCTGCAGGACTCTCCTGAGATTGCAGACTTCTTCACGGAGCTAGTGGATGCAATTGGAGATGTGTCTCTGCAGCTACAGCAAGATGATACAGTCCAGATGATGGAGGGGATGGTACACCCCTACCAAG
Seq A exon
GAGATAAGGTGAGATACTGTGAGATAGCAAATCAAAGAGTGATGGAAGTAATCGACTCTGCCAGGACACGACAAGAACTCCTTCATGCAAAGACTTTCCACAGCAGCCAGCAAGGCAGCTCCATGTTACCCCAGCATGACTCTGAAGCATCTGAGGGTCTGAAACCAGAACCTGACACGTGGATCTATCCCTTAATCCAAATGAAACCTTTTGGGATTCAAATAGATGAGATGGTCACAGAGACATTGCTGACAGAGGCTGAACGAGATGCCAAGATATACCTCACCACGGGCTACTTCAACCTGACACAAGCTTACATGGACCTCATTCTGGGCACTAGGGCAGAATATCGGATTCTTCTGGCCTCACCAGAGGTGAATGGCTTTTTTGGTGCCAAAGGGGTGGCAGGTGCCATCCCTTCTGCCTATGTTTACATAGAACACCAGTTTTACAATGAGGTCTGCTGCCTTCACCAGCAGGAGAGGGTCCAGCTGCAGGAGTACTCCAGGGCTGGATGGACTTTCCATGCCAAAG
Seq C2 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGTCTTCCCTGCCTAACCCTGATTGGGTCTCCTAATTTTGGATATCGATCCGTTCACCGTGACTTGGAAGCTCAGGTTGCAATAGTGACAGAAAATAAAGCTTTGCAGCAGCAACTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.084 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(22.8=60.7)
A:
PF130911=PLDc_2=PU(63.9=55.3)
C2:
PF130911=PLDc_2=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACCTGAGTGATTTGTACT
R:
CTGGTGGAGTTGCTGCTGC
Band lengths:
328-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]