RnoEX6050770 @ rn6
Exon Skipping
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107011080-107021905:+
Coord C1 exon
chr10:107011080-107011258
Coord A exon
chr10:107012746-107013267
Coord C2 exon
chr10:107021757-107021905
Length
522 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTATGTCTTCTGCAGGTG
3' ss Score
12.29
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGCAAACCTGAGTGACTCGTACTTCACCAACCGCCAGGACCGCTATGTGTTCTTGCAAGACTGCGCTGAGATCGCAGACTTCTTCACGGAGCTGGTGGATGCTGTGGGGGATGTGTCCTTGCAGTTGCAGGGTGATGACACAGTGGAGGTGGTGGATGGGATGGTGCACCCTTACAAAG
Seq A exon
GTGACCGGGCTGCGTACTGCAGAGCAGCTAACAAACGGGTCATGGACGTTATTCACTCAGCCAGGACCCGACAGCAGATGCTGCATGCACAGACCTTTCACAGTGACTCCCTGCTGAGCCAGGAAGAGGCTGCAGCTGCTGGTGATCGCAGACCAGCACCGGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATAGATGAGATAGTCACTGAGACCCTGCTGACGGAAGCTGAGCGGGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACACAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCCGAGTATCAGATCCTTCTAGCCTCACCAGAGGTGAACGGCTTCTTTGGGGCTAAGGGTGTGGCCGGCGCCATCCCAGCTGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAAGTGTGCAGCCTGGGGCAACAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGGGGCTGGACCTTTCATGCCAAAG
Seq C2 exon
GCCTCTGGCTGTACCTGGCAGGGAGTAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAGGCCCAGATTGCCATCGTAACAGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949-'18-11,'18-10,20-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(21.9=57.4)
A:
PF130911=PLDc_2=PU(67.1=65.1)
C2:
PF130911=PLDc_2=FE(28.8=100)
Main Skipping Isoform:
ENSRNOT00000004007fB10575
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACCTGAGTGACTCGTAC
R:
CAGGGCTCGGCTCTCTGTTA
Band lengths:
310-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]