BtaEX6091116 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61982210-61985337:+
Coord C1 exon
chr19:61982210-61982376
Coord A exon
chr19:61983139-61983272
Coord C2 exon
chr19:61985200-61985337
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCTTCGCGGGCTTCTTCAGGAT
3' ss Score
7.07
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
GTTAGTGGTGTTCGGAATTGCCTTAATCCCCACTGTCTGCGAGAAGATCGTGTATTCAGTGTATTTTCATGATCATCGCTGGGAGTTTTCACCCGGAATGTACTTCCGTTCTCTGGAACAGCTCCCTCAACCTCCTCTGACCAACCTGTTGATCATCAACAATACAG
Seq A exon
GATCCAGTATTGAAGATGCTGTGCAGTCCCTGAAGCATCAGAATCTAGTTCTGGAGGTAGATGATGCTAGAAATAGAAACGGCTCAGACGACCCTTCCTACAACGGAGCCATCATCGTGTCTGGTGGCCACAGG
Seq C2 exon
GATTACAGATTTTCAGTTGCATGCAATACCAAGAGGATGAACTGTTTTCCTGTTCTCATTGGGATTGTTAGCAATGCCCTGCTTGGAATCTTTAATGTCACAGAGCTTATTAAGACGGAGAGAAGCACGTTTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(7.9=43.9)
A:
PF126982=ABC2_membrane_3=FE(13.9=100)
C2:
PF126982=ABC2_membrane_3=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTGTTCGGAATTGCCTT
R:
AGATTCCAAGCAGGGCATTGC
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]