RnoEX0004971 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98325906-98353883:-
Coord C1 exon
chr10:98353717-98353883
Coord A exon
chr10:98352297-98352430
Coord C2 exon
chr10:98325906-98326066
Length
134 bp
Sequences
Splice sites
3' ss Seq
TACATTTTACTGTCTGTTAGGAG
3' ss Score
6.3
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GATTCTGATTTTGGGGATTGGACTTCTGCATATTCTGTCAGCAAATGTTCACAGGTTAGTCAATCAGAGTGATTACTGTTGGGAGCTCTCTCCTCATACGTACTTCCTCACACCTGGCCAACGACCACAGATGCCCCTCACAAACTTACTGATCATCAACAAAACAG
Seq A exon
GAGAAAAGATCGATGACTTCCTACATTCGCTGGAGCAACAGAACATAGCTTTGGAAGTTGATGCCTTTGGGACTAGAAACGGCACAGAGGATAGCCAGTATAATGGCGCTATCATCGTAGCGGGCGGTGAGAAG
Seq C2 exon
GTGCAGCTGAAAGGGAACAGCACAGGGGACACCCCGGAATTCCTAGGGTACTGTCCTCAGGAAAATGCTCTGTGGCAACACATGACTGTGAGGGAACACCTGGAGATATTTGCCGCCATAAAGGGGATGAGCAAAAGCGATGCTGCCGTGGCCATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-20/37=19-32
Average complexity
C2
Mappability confidence:
95%=96=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.3=100)
A:
PF126982=ABC2_membrane_3=FE(12.1=100)
C2:
PF0000522=ABC_tran=FE(37.6=100)
Main Skipping Isoform:
ENSRNOT00000005665fB321
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGGATTGGACTTCTGCA
R:
GGTGTTCCCTCACAGTCATGT
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]