BtaEX6091168 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62129197-62130906:+
Coord C1 exon
chr19:62129197-62129363
Coord A exon
chr19:62129984-62130117
Coord C2 exon
chr19:62130769-62130906
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGATCTTACCCGCATGGTAGGGT
3' ss Score
6.05
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
ATTACTGCTTTTCGGCATCACCTTTGGCCCTCAGCTTTTGGAGCATCTGTCCTATCGGTTACAGCAAAAAAGCTATTCTTGGGGGTTGTCTCCAAACACGTACTTCCTCTCCCCGGGTCAACCACCTCAAGCCCCACTGACCCGCTTACTGGTCGTCAACAGAACAG
Seq A exon
GGTCACGCATTGATGACTTCATACATTCACTGAGGCGCCAAAACATCGATTTAGAAGTGGACGCCCTTGGGACAAGAAATGGCCCCAGCGAGCCATCATACAACGGGGCCATCACTGTGACAGGCAACGACGAG
Seq C2 exon
GATCCCAGATTTTCTATAGCATGTAACACCAAAAGGCTGAATTGCTTTCCTGTACTCATGGACATCATTAGCAATGGGCTACTTGGAATGCTTAATTCTTCAGAACACATTCAGACCGACAGAAGCACGTATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'28-32,'28-31,31-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.222 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(11.2=71.1)
C2:
PF126982=ABC2_membrane_3=FE(15.7=100)
Main Skipping Isoform:
ENSBTAT00000009067fB273
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCATCTGTCCTATCGGT
R:
CGTGCTTCTGTCGGTCTGAAT
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]