GgaEX7009491 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8193082-8194385:-
Coord C1 exon
chr18:8194219-8194385
Coord A exon
chr18:8193539-8193666
Coord C2 exon
chr18:8193082-8193219
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCTTTTGGCTTTCGCATCAGGCT
3' ss Score
5.79
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTGCTGCTCTATGTGGTTTTCCTGCTCCCCCTGATTTTGCAACTGGTACTGATGACTGTCTGGCAGAGCATGGGTGCCTGGGAGCTGTGCTCGTCGCGGTACTTCCTGCCCCTGCGGACCAGGGCTCATGATGACACCACCAACCTGCTGGTGCTCAACAGCACCG
Seq A exon
GCTCAGGCATTGAGGACTTCATCCACGCTCTTGAGAGCCAAGATCTCGCAGTGGAAATTACAAGCAAGGAAAATATCACAGAGGAGCTGAAATACAATGGGGCCATTAAAGTATCTCGTGAAGGCCAG
Seq C2 exon
AGCTACAGGTTTACCATCTTTTGCCACATGGAGGCCATCAACTGCTTCCCAGTGCTTGTGAACATCATCAGCAATGCTCTGCTGAGACCTTTCAGTTCCACCGCACACATCCAGGTCTGGAGCCATCCTTTTACCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(15.4=96.5)
A:
PF126982=ABC2_membrane_3=FE(11.8=100)
C2:
PF126982=ABC2_membrane_3=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTGATTTTGCAACTGGT
R:
GATGTGTGCGGTGGAACTGAA
Band lengths:
251-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]