RnoEX0004998 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98426947-98444944:-
Coord C1 exon
chr10:98444887-98444944
Coord A exon
chr10:98444071-98444204
Coord C2 exon
chr10:98426947-98427038
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGATTTTGCCTTTACGATAGGTT
3' ss Score
7.36
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTATTGCTTTTTGGCATTAGCTTTGTGCCCCAACTTTTGGAACATCTAGTCTACAAG
Seq A exon
GTTCAAGCATTGATAACTTTATACATTCACTAAGACAGCAGGGCATAGCATTAGACGTGGATGCCCTGGGGACCAGAAATGGCAAAGAAGAGGCTCTGTACAATGGTGCTGTCACAGTGCTGGGTGACGAGAAG
Seq C2 exon
CCTTACCTTCATTTTCTCCTTTTCTTTTTCATCCTGCGATGTCTGGAAAGATACATCAGGAAGAAGACGCTGAGAGTGGACCCTGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(3.6=19.3)
A:
PF126982=ABC2_membrane_3=FE(14.2=100)
C2:
PF126982=ABC2_membrane_3=PD(3.6=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTTTTTGGCATTAGCTTTGTG
R:
TGAACACAGGGTCCACTCTCA
Band lengths:
146-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]