BtaEX6091117 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61979569-61983272:+
Coord C1 exon
chr19:61979569-61979767
Coord A exon
chr19:61982210-61982376
Coord C2 exon
chr19:61983139-61983272
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTTCTCTGACTTAGGTT
3' ss Score
10.44
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATCCCGGTGTCGGGGGCCTGGCGGAAATCGACGTGACCCGAGACCCTGGAGCGGAGTCTGAAGCCCAGCAGGCTCTTGGTTCCCTTCCGGAAGTGAAACAGGCCGCCAGCTCTGCAGCTCTGTGGAGACGCCAAGTCTGTGCGGTGGCGAGACTCCGCTTCTTAAAGCTGAGGAATGAGAGGAAGATTTTCCTGTCCTT
Seq A exon
GTTAGTGGTGTTCGGAATTGCCTTAATCCCCACTGTCTGCGAGAAGATCGTGTATTCAGTGTATTTTCATGATCATCGCTGGGAGTTTTCACCCGGAATGTACTTCCGTTCTCTGGAACAGCTCCCTCAACCTCCTCTGACCAACCTGTTGATCATCAACAATACAG
Seq C2 exon
GATCCAGTATTGAAGATGCTGTGCAGTCCCTGAAGCATCAGAATCTAGTTCTGGAGGTAGATGATGCTAGAAATAGAAACGGCTCAGACGACCCTTCCTACAACGGAGCCATCATCGTGTCTGGTGGCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(7.9=43.9)
C2:
PF126982=ABC2_membrane_3=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCGGAAGTGAAACAGG
R:
CACCAGACACGATGATGGCTC
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]