BtaEX6091122 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61974264-61976747:+
Coord C1 exon
chr19:61974264-61974383
Coord A exon
chr19:61974624-61974762
Coord C2 exon
chr19:61976657-61976747
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCGCATGCTCTCCACTGCAGGTT
3' ss Score
9.24
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTAAAAAGCATTATGATGGAATTAGACATGCACAATATTCAAGATGTCATCGCTAAAGAGTTAAGTGGTGGACAGAAGAGAAAACTCACATTTGGGATTGCCATTTTAGGAGATCCTCAG
Seq A exon
GTTTTGCTCCTGGACGAGCCAACTGCTGGACTGGATCCTTTCTCAAGGCACCTCGTGTGGAACTTCCTGAAGGAGCGGAAAACTAACCACACGATCCTTTTTAGTACGCAGTTCATGGACGAGGCTGACATCCTGGCTG
Seq C2 exon
ATAGGAAAGTGTTTCTGTCTAACGGGAAACTCAGATGCGCAGGGTCGTCTCTGTTCCTGAAGCGGAAATGGGGTATTGGATATCACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.7=100)
A:
PF0000522=ABC_tran=PD(5.5=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTATGATGGAATTAGACATGCA
R:
AAGTGATATCCAATACCCCATTTCCG
Band lengths:
202-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]