RnoEX0004965 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98364235-98365265:-
Coord C1 exon
chr10:98365146-98365265
Coord A exon
chr10:98364833-98364971
Coord C2 exon
chr10:98364235-98364325
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGATTCTTCCTCTAGATT
3' ss Score
10.26
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTACAAAGGGTTTTGCTGGCACTGGAGATGAAAAATATTCAGAATACTCTTGTTCAAAACCTAAGTGGTGGACAGAAGAGAAAGCTGACATTTGGAATCGCCATTTTAGGAGACCCTCAG
Seq A exon
ATTTTCCTCCTGGATGAGCCCACTGCTGGGCTGGATCCCTTTTCAAGGCACCGGGTGTGGAATCTCTTGAAGGAGCGCAAAGCAGACCGCGTGGTCCTCTTCAGCACACAGTTCATGGATGAAGCTGACATCCTGGCTG
Seq C2 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-14/37=13-15
Average complexity
S
Mappability confidence:
93%=88=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.9=100)
A:
PF0000522=ABC_tran=PD(5.5=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAGGGTTTTGCTGGCACT
R:
CTTAAGTGATAACCAATCCCCCA
Band lengths:
210-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]