HsaEX6024475 @ hg38
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69187681-69214851:-
Coord C1 exon
chr17:69214704-69214851
Coord A exon
chr17:69193110-69193248
Coord C2 exon
chr17:69187681-69187879
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATACGTTTCCTCCTCTGTAGGTT
3' ss Score
10.04
5' ss Seq
CTGGTGATT
5' ss Score
3.02
Exon sequences
Seq C1 exon
ATTACACACCTGGATAATTACTTAAGTGGTGTTATTTTTCCTGATCCCTCTGGGGATTCATACAAAATGATAGCCACTTTTTTCATTTTGGCATTTGATACTCTTTTCTATTTGATATTCACATTATATTTTGAGCGAGTTTTACCTG
Seq A exon
GTTTTGCTGCTAGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCGAGTGTGGAGCCTCCTGAAGGAGCATAAAGTAGACCGACTTATCCTCTTCAGTACCCAATTCATGGATGAGGCTGACATCTTGGCTG
Seq C2 exon
ATTTTGACATTGGGAAACAAGAGAAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTAGTGCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263_MULTIEX4-7/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(13.0=84.0)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTCCTGATCCCTCTGGG
R:
CGTCTCCAGAGAGCTGCACTA
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains