BtaEX6091294 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63807116-63816855:-
Coord C1 exon
chr19:63816672-63816855
Coord A exon
chr19:63815284-63815512
Coord C2 exon
chr19:63807116-63807320
Length
229 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTCTTTTGTTGTAGGAA
3' ss Score
11.53
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTATTTGAAGTGGTGGAGCGAGTGGAAGAGCTGAGAAGGAAGTGGCCAGTAGCGTGGGGCAAGTTGGATGATGGAAGTATTGGTGTGGTGACTCCATATGCAGACCAGGTGTTCAGGATACGCGCCGAACTTCGAAAAAAGAGGTTATCTGACGTTAACGTAGAAAGGGTGCTCAATGTTCAAG
Seq A exon
GAAAGCAATTCAGAGTTTTGTTTCTTAGCACAGTACGTACAAGGCATACTTGTAAACATAAACAGACACCAATTAAAAAGAAGGAGCAGCTGCTAGAAGACTCCACAGAGGACTTGGATTATGGCTTTTTGTCTAACTACAAGCTCCTCAACACCGCCATCACAAGAGCACAGTCCCTGGTTGCCGTGGTGGGGGACCCCATCGCTCTGTGCTCCATTGGGAGATGCAG
Seq C2 exon
GAAATTTTGGGAGCGGTTTATTGCCCTGTGTCATGAAAACAATAGCCTGCATGGAATCACTTTTGAACAGATCAAAGCGCAGCTAGAGGCTTTAGAACTAAAGAAGACATACGTGTTGAATCCACTGGCACCTGAATTTATACCCCGGGCTCTAAGAGCACAGCACGCGGGAAACACCAACAAACCGCAGCAATCACCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746-'52-52,'52-51,53-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.275
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(28.6=100)
A:
PF130871=AAA_12=PD(31.5=87.0)
C2:
PF0714510=PAM2=WD(100=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGTGGAAGAGCTGAGAA
R:
AGGTGCCAGTGGATTCAACAC
Band lengths:
301-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]