MmuEX0022712 @ mm10
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107637780-107656248:+
Coord C1 exon
chr11:107637780-107637927
Coord A exon
chr11:107649112-107649340
Coord C2 exon
chr11:107656044-107656248
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCAATGTTTTTCTAGGAA
3' ss Score
10.53
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CTACACCTCTGAGCTTTTCTATGAGGGGAAGCTGATGGCCAGTGGGAAGCAGCCGGCGCACAAGGACTTCTATCCACTCACGTTCTTTACGGCACGGGGGGAGGACGTCCAAGAGAAGAACAGCACGGCATTCTACAACAATGCAGAG
Seq A exon
GAAAGCAGTTCAGAGTTCTGTTTCTTAGCACAGTGCGTACACGCCACACTTGCAAGCACAAGCAGACGCCAATTAAAAAGAAAGAGCAACTCCTGGAAGACTCCACCGAGGACTTAGATTATGGTTTTCTATCCAACTACAAACTTCTCAATACGGCCATCACCAGAGCACAGTCCTTGGTTGCTGTGGTGGGTGACCCTGTTGCTCTGTGCTCTATTGGAAGGTGTAG
Seq C2 exon
AAAGTTTTGGGAGCGGTTTATTGCCCTGTGTCATGAAAACCACAGCTTGCACGGGATCACGTTCGAACAGATCAAGGCACAGTTAGAGGCTTTAGAACTCAAGAAGACTTACGTGTTGAATCCACTGGCTCCTGAGTTTATCCCCCGGGCTTTACGACTGCAGCATTCAGGAAACAGTAGCAGACAGCAGCAGTCACCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.232
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(23.0=100)
A:
PF130871=AAA_12=PD(31.5=87.0)
C2:
PF0714510=PAM2=WD(100=26.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGCACAAGGACTTCTATC
R:
GTGACTGCTGCTGTCTGCTAC
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types