DreEX0037287 @ danRer10
Exon Skipping
Gene
ENSDARG00000030560 | helz
Description
helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
Coordinates
chr3:60768077-60780818:+
Coord C1 exon
chr3:60768077-60768260
Coord A exon
chr3:60771676-60771904
Coord C2 exon
chr3:60780608-60780818
Length
229 bp
Sequences
Splice sites
3' ss Seq
TACCGTGTGTGTGTGTGCAGGTA
3' ss Score
9.53
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGTTTGAGATCGTGGAGCGTGTGGAGGAGATGAGGAAGAAGTGGCCCGTGTCCTGGGGGAAGCTGGAGGAGGGCAGCATCGGTGTGGTTTCGCCCTACGCCGACCAGGTCTTCCGGATCAGAGCCGAACTGCGCAAAAAGAGGATGTCGGAGGTCAGCGTGGAGAGAGTGCTCAACGTGCAGG
Seq A exon
GTAAGCAGTTCCGGGTGCTGTTCCTGAGCACGGTGCGCACGCGTCACACCTGCAAACACAAGCAGACGGCCATCAAGAGGAAGGAGCAGCTGGTGGAGGACTCGACTGAAGATCTGGACTACGGCTTTCTGTCCAACTACAAGCTGCTGAACACCGCCATCACTCGAGCGCAGTCACTGGTGGCCGTGGTGGGAGATCCTATCGCCCTCTGCTCTGTGGGACGCTGCAG
Seq C2 exon
AAAGTTCTGGGAGACCTTCATCTCCATCTGCCATGAGAACCACAGCCTCCACGGCATCACCTTTGAGCAGATTAAGATCCAGCTGGAGGCCCTGGAGCTGAAGAAGACGTATGTGCTCAACCCGCTGGCCCCAGAGTTCATCCCTCGGGCCCTGCGCTCGCAGCATCCGCCGCAACAGGGGCCCGGAAAACACCAGCACTCCCCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030560-'22-27,'22-24,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.310
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(28.6=100)
A:
PF130871=AAA_12=PD(31.5=87.0)
C2:
PF0714510=PAM2=WD(100=25.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGATCGTGGAGCGTGT
R:
CGGGTTGAGCACATACGTCTT
Band lengths:
306-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]