RnoEX0041510 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95867073-95876992:+
Coord C1 exon
chr10:95867073-95867256
Coord A exon
chr10:95869661-95869889
Coord C2 exon
chr10:95876788-95876992
Length
229 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCAATGTTTTTGTAGGAA
3' ss Score
9.45
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTATTTGAAGTGGTGGAGCGTGTGGAAGAGCTAAGACGGAAGTGGCCAGTGGCATGGGGGAAGTTAGACGACGGCAGCATTGGTGTGGTGACACCATACGCTGATCAGGTGTTCAGAATACGAGCTGAACTTCGGAAGAAGAGGCTCTCGGACGTGAATGTAGAAAGGGTGCTCAATGTCCAAG
Seq A exon
GAAAGCAATTCAGAGTTCTGTTTCTTAGCACAGTGCGTACACGCCACACTTGCAAGCATAAGCAGACGCCAATTAAAAAGAAAGAGCAACTTCTGGAAGACTCCACCGAGGACTTAGATTACGGGTTTCTATCCAACTACAAACTTCTCAATACCGCCATTACCAGAGCACAGTCCCTGGTTGCTGTGGTGGGCGACCCCGTTGCTCTGTGCTCTATTGGAAGGTGTAG
Seq C2 exon
AAAGTTTTGGGAGCGGTTTATTGCCCTGTGTCATGAAAACCACAGCTTGCACGGGATCACATTCGAACAGATCAAGGCCCAGTTAGAGGCTTTAGAGCTCAAGAAGACTTACGTGTTGAACCCACTGGCTCCTGAATTTATTCCCCGGGCTTTCAGACTGCAGCATTCAGGAAACAGTAGCAGACAGCAGCAGTCACCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.217
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(28.6=100)
A:
PF130871=AAA_12=PD(31.5=87.0)
C2:
PF0714510=PAM2=WD(100=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCATGGGGGAAGTTAGA
R:
AGTCTGAAAGCCCGGGGAATA
Band lengths:
296-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]