GgaEX6016286 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7209860-7214872:+
Coord C1 exon
chr18:7209860-7210043
Coord A exon
chr18:7210972-7211200
Coord C2 exon
chr18:7214668-7214872
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCTTCATTTTTAGGAA
3' ss Score
11.6
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTGTTTGAAGTAGTAGAGCGTGTTGAGGAGTTAAGAAGAAAATGGCCTGTTGCCTGGGGCAAGTTGGATGATGGCAGTATAGGTGTCGTGACACCTTATGCTGATCAGGTGTTCAGAATTCGGGCTGAACTTCGGAAAAAAAGACTGTCTGATGTCAGTGTAGAGAGAGTGCTAAACGTTCAGG
Seq A exon
GAAAGCAGTTTAGAGTGTTGTTTCTCAGCACAGTACGAACACGGCATACGTGCAAACATAAGCAAACACCAATTAAAAGGAAAGAGCAGTTACTCGAGGATTCAACAGAGGACTTGGATTATGGTTTCCTGTCTAATTACAAACTTCTCAATACTGCCATTACAAGAGCACAATCCTTGGTAGCTGTGGTGGGAGATCCCATTGCTTTATGTTCCATTGGAAGATGCAG
Seq C2 exon
GAAATTTTGGGAAAGGTTTATTGCCCTATGTCATGAGAATGAAAGTCTCCACGGTATCACATTTGAACAGATCAAAGCTCAGCTGGAAGCTTTGGAGTTAAAGAAAACTTATGTGTTGAACCCACTGGCTCCTGAATTTATTCCCCGAGCTCTTCGGCATCAGCATTCTGCGAATACCACCAAACAGCAGCAGTCACCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.275
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(28.6=100)
A:
PF130871=AAA_12=PD(31.5=87.0)
C2:
PF0714510=PAM2=WD(100=26.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTTGGATGATGGCAGT
R:
AATGCTGATGCCGAAGAGCTC
Band lengths:
294-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]