BtaEX6091370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022887 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr24:3841029-3986939:-
Coord C1 exon
chr24:3986819-3986939
Coord A exon
chr24:3962523-3962701
Coord C2 exon
chr24:3841029-3842332
Length
179 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTCTTACTTCATAGGTC
3' ss Score
11.53
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGAAAAACCTTTCAAATGTGACGAGTGTAACTTTGCTTCCACGACCCAGTCTCACCTGACACGGCACAAGCGGGTACACACAGGAGAGAAGCCCTACAGATGCCCCTGGTGCGATTACAG
Seq A exon
GTCAAATTGCGCTGAAAACATCCGCAAACACATCCTCCACACGGGCAAACACGAAGGCGTCAAGATGTACAACTGCCCCAAGTGTGACTATGGCACCAACATCCCCGTGGAGTTCCGGAACCACCTGAAAGAACAGCATCCGGACATCGAGAACCCGGACCTGGCCTACCTGCACGCAG
Seq C2 exon
GCATTGTGTCCAAGTCCTACGAATGCCGCCTGAAGGGCCAGGGAGCCACCTTCGTGGAGACAGACAGCCCGTTCACGGCGGCCGCGCTGGCGGAGGAGTCTCCGGTCAAGGACAGGCCGCTGCGGAGCAGCAGGAGGCCGGCGGCTCCACCAGAGCCGGTCCAACAGGTCATCATCATCCAGGGCTATGAGGGCGAGTTCGCCCTGGACGCCTCTGTGGAGGAGACGGCTGCGGCCACGCTGCAGACACTGGCCCTGGCCGGCCAGGTGGCCCGCGTGGTGCACATCACCGAGGACGGCCAGGTCATCGCCGCGGGGCAGAGCGGGGCGCAAGGGGGCAGCGGGGCTCCCAGCCCGGGCCTGCCGGAGCCGCTGGCCGACGGAGCCACGCAGGTGGTGGTCGTGGGCGGCTCCATGGAAGGGCATGGCATGGACGAGCCCCTCAGCCCCAGCGGGGCCGTCATTCAGCAGGTGACCAAGCAGGAGATTCTAGGCCTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022887-'12-17,'12-11,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.115 C2=0.415
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF139091=zf-H2C2_5=WD(100=41.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGTACACACAGGAGAGAA
R:
GCCCTCATAGCCCTGGATGAT
Band lengths:
245-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]