DreEX6039335 @ danRer10
Exon Skipping
Gene
ENSDARG00000087536 | znf407
Description
zinc finger protein 407 [Source:ZFIN;Acc:ZDB-GENE-110411-123]
Coordinates
chr16:6800977-6805564:+
Coord C1 exon
chr16:6800977-6801097
Coord A exon
chr16:6802041-6802219
Coord C2 exon
chr16:6804889-6805564
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGTGTATCTTCTGTCATCAGATC
3' ss Score
8.87
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTGAGCGGCCCTTCAAGTGTAAGCTGTGCAACTTCGCCTCAACTACACAGTCCCATTTGACGCGGCACAAGCGTGTGCACACGGGCGAGAAGCCTTATCGATGCCCCTGGTGCGACTACAG
Seq A exon
ATCTAATTGCGCAGAGAACATCCGTAAACACATCCTGCACACAGGCAAGCACGAGGGGGTGAAGATGTATAACTGTCCTAAGTGCAGCTATGCCACCAATGCCCCGATGGACTTCAGAAACCACCTTAAAGAGACTCATCCCGACATCGAGAACCCAGATCTGGCTTATCTACATGCAG
Seq C2 exon
GAATTGTATCCAAGTCCTATGAGTGTCGTCTGAAGGGTCAGGGGGCATCTTTTGTCCAGGCAGAAACTGTGTTTTCCCCTGAGGAGAGCGAACTGGGTTCTGAGGCAGTTCAGCAGGTCATCATCATCCAGGGCTACAGTGGAGGAGAGGTGGCCATCGATCAGGCTCTGGAGCAGTCGGCCGCTGCCACTTTACAGACCCTCGCCATGTCCAGCCAGCTGGCCGAAGTGCTGCACATCACCGAGGACGGGCAGCTCATCACATCCGGTCAGGAAGTCTCTACAGGAGGCCAGACCACTCAATATGTCCTGGTGGAGTCATCCGGAGAAACCGTAGGAGAAGGAAGACCAGAAGTGGAGGCTGGACACAATGCATCTGAATCGTCTTCTGCTCTGGATGCTTTGCTTTGTGCTGTGACGGAGTTGGGCCAGCAGGCCTGCGCTGCTGAGGGAGAGATTTCCACCACTGCCGCGGCAGTGTCTGAAAGTCATCCAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087536-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.131 C2=0.445
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF134651=zf-H2C2_2=WD(100=45.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCTGTGCAACTTCGCCTC
R:
CTCCACTGTAGCCCTGGATGA
Band lengths:
246-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]