GgaEX0020346 @ galGal4
Exon Skipping
Gene
ENSGALG00000013681 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr2:91473239-91596115:-
Coord C1 exon
chr2:91595995-91596115
Coord A exon
chr2:91569155-91569333
Coord C2 exon
chr2:91473239-91474590
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCATTGCTTTTTAGATC
3' ss Score
10.98
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GAGAGAAACCATTCAAATGTGATGAGTGCAACTTTGCTTCTACAACACAGTCACATCTGACACGACACAAGCGTGTCCATACTGGAGAAAAGCCTTACAGATGTCCCTGGTGTGACTACAG
Seq A exon
ATCTAACTGTGCTGAAAACATCCGTAAACACATTTTACATACAGGAAAGCATGAAGGAGTGAAAATGTATAACTGTCCTAAATGTGACTATGGAACCAATATCCCTGTAGAGTTTCGTAACCACTTGAAAGAACTACACCCAGATATTGAAAATCCTGATCTGGCGTACCTACATGCCG
Seq C2 exon
GCATTGTATCCAAGTCTTATGAATGCCGACTGAAGGGGCAAGGAGCAACCTTTGTGGAAACTGCCAGTCCTTTTACTGCAGCAGCGCTGGGAGAGGTTTCTCCAGTTAAAGAGAAGGTCTTTCGAGGCAGCAGGAGACAGCAACCATCGCCTGAACAAGTTCAGCAAGTTATTATTATTCAAGGATATGATGGCGACTTTGCGTTTGATGTATCTGCAGAAGAAACAGCAGCGGCGACCCTTCAGACTCTGGCAATGGCTGGACAGATGGCCAGGGTAGTCCATATTACAGAAGATGGGCAGGTCATAGCTACAGATCAGAACGGCTCAGATGTGAGTAGTGTGGTTCCAGGGCAGATACTTACTGAGCAGCTAGCAGATGGCGCAACACAGGTGGTAGTGGTTGAAGGCTCAGTAACAGGAACTGATATGGAGGAGGCTGTTCCTATAGATGCAGTTCCTGATTCCAGTGGTGCTGTACTGCAACAGATAATGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013681-'16-38,'16-30,20-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.032 C2=0.422
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF134651=zf-H2C2_2=WD(100=45.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTACAGATGTCCCTGGT
R:
ACATCAAACGCAAAGTCGCCA
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]