RnoEX0101367 @ rn6
Exon Skipping
Gene
ENSRNOG00000043357 | Zfp407
Description
zinc finger protein 407 [Source:RGD Symbol;Acc:1310645]
Coordinates
chr18:81057519-81199159:-
Coord C1 exon
chr18:81199039-81199159
Coord A exon
chr18:81170024-81170202
Coord C2 exon
chr18:81057519-81059873
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTCTTACTTGATAGGTC
3' ss Score
11.3
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GGGAAAAGCCTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGGCATAAGCGTGTGCACACTGGAGAGAAGCCATACAGGTGCCCTTGGTGTGACTACAG
Seq A exon
GTCAAACTGTGCTGAGAATATCCGCAAACACATTTTACACACCGGCAAACATGAAGGCGTCAAGATGTACAACTGCCCAAAGTGTGACTATGGGACGAATGTCCCCGTGGAATTCCGGAACCACTTGAAGGAGCAGCATCCTGACATTGAGAACCCTGACCTCGCATACTTGCATGCTG
Seq C2 exon
GCATCGTGTCCAAGTCCTATGAGTGCCGCCTGAAAGGACAAGGAGCCACCTTTGTGGAAACAGACAGCCCCTTCACTGCAGCCACCCTGGCAGAGGAGTCACCTGTCAAGGAGAAGTCCCTGAGGAGCAGCAAGAGACAGGCTTCCTCCCCCGAGCAGGTCCAGCAGGTCATCATCATCCAGGGCTATGATGGGGAGTTTGCCCTGGATGCCTCTGTGGAAGAGACTGCTGCGGCCACACTGCAGACACTGGCAATGGCTGGCCAAGTGGCCAGGGTGGTACACATCACAGAACATGGGCAGGTCATTGCCACAAGTCAAAACGGGTCCCATGTTGGCAGTGTGGTACCTGGACCCATCCTCCCCGAGCAGTTGGCAGATGGAGCCACCCAGGTGGTTGTCATGGGGGGTTCCATGGAAACTCACAGTGTGGATGAGGCCCTCAGTCCAGGTGCCGCTGTCATACAGCAGGTCACCAAGCAGGAGCTCTTAAGTCTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043357-'13-20,'13-15,17-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.230 C2=0.385
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF139091=zf-H2C2_5=WD(100=41.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACTCGGCATAAGCGTGT
R:
TGATGATGACCTGCTGGACCT
Band lengths:
243-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]