MmuEX6002639 @ mm9
Exon Skipping
Gene
ENSMUSG00000048410 | Zfp407
Description
zinc finger protein 407 [Source:MGI Symbol;Acc:MGI:2685179]
Coordinates
chr18:84449212-84512458:-
Coord C1 exon
chr18:84512338-84512458
Coord A exon
chr18:84485198-84485376
Coord C2 exon
chr18:84449212-84450657
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTCTTGCTTGATAGGTC
3' ss Score
12.32
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GGGAAAAGCCTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGTCATAAGCGTGTGCACACTGGAGAGAAGCCATACAGGTGCCCTTGGTGTGACTACAG
Seq A exon
GTCAAATTGTGCTGAGAATATCCGCAAACACATTTTACACACCGGCAAACATGAAGGTGTCAAGATGTACAACTGCCCAAAATGCGACTATGGGACGAATGTCCCCGTGGAGTTCCGAAACCACCTGAAAGAGCAGCACCCCGACATTGAGAACCCTGACCTCGCGTACTTGCATGCTG
Seq C2 exon
CTTTCCAAAAATGGAAGGTGGAGGAGCAGGTCAGCAGCTGAACTGATCTCAGGGTCAGCCAACTCTCTCCTCTCACCTTAGCAACCACAAGATGAGCAGCTTTTGAAACCAGCACATTCATGGGAACTCGCCTGCCTGAAGAACCCTGCCGCCACCGCAGACACTTCATCAGGTGGAAGAGATGGCTTTTGCAAAGACACCATGCGCAAGCAGGCTGCAGGTGACTTTTCATAGCAGCTGCTACCGTGTGTGTTTCAGAAGATCTTCCCGGGAAGTCTCTTAAGCCTGATTTCTCATAGGAACTGGTCATTTCAATCCTACCTTGAATTTATATCTAAGGGCACATTAATAAATTATTAGGAGAAATATTAACCGCATAAGCATAATTGGCCAGAGAGCATAGGTTTTGAGTGGAAAACCAGTCACCTTGGGTCCTGGCCTGCCGCACAGGTGTTGAGACAGTAGCAAGCAGTGCTGTGTGTCAGCTTCCTGAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048410-'11-14,'11-13,13-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.148 C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF139091=zf-H2C2_5=WD(100=41.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTTGGTGTGACTACAG
R:
TGAAAAGTCACCTGCAGCCTG
Band lengths:
252-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: