HsaEX6039369 @ hg19
Exon Skipping
Gene
ENSG00000215421 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:19904]
Coordinates
chr18:72601874-72777628:+
Coord C1 exon
chr18:72601874-72601994
Coord A exon
chr18:72632470-72632648
Coord C2 exon
chr18:72775106-72777628
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTCTTACTTGGTAGGTC
3' ss Score
10.16
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GAGAAAAACCTTTCAAGTGCGATGAGTGTAACTTTGCCTCCACAACTCAGTCCCATTTGACTCGGCATAAACGTGTCCACACTGGAGAAAAGCCCTACAGATGCCCCTGGTGTGACTACAG
Seq A exon
GTCAAACTGTGCTGAAAATATCCGCAAACACATTCTGCATACTGGCAAACATGAAGGAGTCAAGATGTACAACTGTCCCAAGTGTGACTACGGGACCAACGTCCCGGTGGAGTTCCGGAACCATTTGAAGGAACAGCATCCTGACATCGAAAACCCGGACCTCGCTTACCTGCATGCTG
Seq C2 exon
GCATTGTTTCCAAGTCGTACGAGTGCCGTCTAAAGGGACAAGGAGCCACCTTCGTGGAGACAGACAGCCCCTTCACCGCGGCGGCCTTGGCAGAAGAGCCCCTCGTCAAGGAGAAGCCCCTCAGAAGCAGCAGGAGGCCAGCGCCGCCCCCTGAGCAGGTGCAGCAGGTCATCATCTTCCAGGGCTACGACGGGGAGTTTGCCCTGGACCCCTCGGTGGAGGAGACGGCCGCCGCCACGCTGCAGACGCTGGCCATGGCCGGCCAGGTGGCCCGGGTGGTGCATATCACGGAGGATGGCCAGGTCATCGCCACGAGTCAGAGCGGGGCACATGTAGGCAGCGTGGTGCCCGGACCCATCCTCCCCGAGCAGCTGGCTGATGGAGCCACCCAGGTGGTCGTCGTGGGGGGCTCCATGGAAGGCCACGGCATGGATGAGTCCCTCAGTCCAGGTGGCGCTGTGATACAACAGGTGACCAAGCAGGAGATTTTAAACCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215421-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.148 C2=0.339
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF139091=zf-H2C2_5=WD(100=41.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCCCATTTGACTCGGC
R:
AAGATGATGACCTGCTGCACC
Band lengths:
254-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)