BtaEX6091844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33176113-33203876:-
Coord C1 exon
chr24:33203672-33203876
Coord A exon
chr24:33177109-33177253
Coord C2 exon
chr24:33176113-33176253
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTCCTTGAGCACAGATG
3' ss Score
4.17
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTTGCAGCTGCGGCCGGCGCCTTTGTGAGGAGACGACAGGGCGGTGCCTGTGTCCTCCCCTGACAGTCAGGCCCCAGTGTGACGTGTGTGAGGTACACTCCTTCAGCTTCCACCCCCTGGCTGGCTGCGAAGGCTGCAATTGTTCCCGGACGGGCACTGATGGGACCACCACCCCGGAGTGCGACGGGGACCACGGGCAGTGCAG
Seq A exon
ATGCAGGCCCAGGATCACAGGGCGGCAGTGTGACCGGTGCGCTCCCGGCTTCTACCGCTTTCCTGAGTGCCTCCCCTGCCACTGCAGCAGAGATGGGACCGAGCCGGGAGTCTGTGACCCAGGCACCGGGGCATGTCTCTGCAAG
Seq C2 exon
GAAAACGTGCAAGGCACAGAATGCAACATGTGTCGGGAAGGGTCATTCTACCTGGACCCAGCGAATCCCAAGGGTTGTACCAGCTGCTTTTGTTTCGGAGCCAGTCATCACTGTCACAGCACACTTAAGAGAAGGGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'33-36,'33-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(6.1=4.3),PF0005319=Laminin_EGF=PU(46.9=33.3)
A:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
C2:
PF0005319=Laminin_EGF=PD(51.0=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGAGGAGACGACAGGG
R:
TGGGTCCAGGTAGAATGACCC
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]