GgaEX1032799 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102845301-102849813:+
Coord C1 exon
chr2:102845301-102845505
Coord A exon
chr2:102848754-102848898
Coord C2 exon
chr2:102849673-102849813
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTGTTTGATAAAGATG
3' ss Score
4.81
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TATGCAACTGTGGGCAGCGTCTTTGTGATGACTTAACTGGCAAATGCATTTGCCCTCCTCGAACTGTGAAACCAAAATGTGAAGTGTGTGAGAGATATTACTTCAGTTATCACCCTCTTGCTGGCTGTGAGAGCTGCAATTGTTCAGAAAGAGGAGTTGTTAATGCAGCAAGACCAGAATGTGAAAAAAACAACGGGCAGTGCAA
Seq A exon
ATGCAAACCAGGAATAAGAGGACGACAGTGTGATCGGTGTGCTCCAGGTACTTATGATTTCCCGAACTGCATACCATGTAAATGTAACAGAGATGGAACTGAACCAGATGTTTGTGATCCTCAGACAGGAATTTGTCTCTGCAAG
Seq C2 exon
GAGAATGTTGAAGGTGCAGAATGTGATATTTGCCGACCCGGATCATTTTATCTGGACCCTTCTAATCCCAAGGGATGCACCACTTGTTTTTGTTTTGGGGTAACAAGCAGCTGTCGCAGCACAAATCGTCGTCGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'37-47,'37-45,39-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCCTCGAACTGTGAAAC
R:
AACAAGTGGTGCATCCCTTGG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]