GgaEX1032799 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106340634-106345146:+
Coord C1 exon
chr2:106340634-106340838
Coord A exon
chr2:106344087-106344231
Coord C2 exon
chr2:106345006-106345146
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTGTTTGATAAAGATG
3' ss Score
4.81
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TATGCAACTGTGGGCAGCGTCTTTGTGATGACTTAACTGGCAAATGCATTTGCCCTCCTCGAACTGTGAAACCAAAATGTGAAGTGTGTGAGAGATATTACTTCAGTTATCACCCTCTTGCTGGCTGTGAGAGCTGCAATTGTTCAGAAAGAGGAGTTGTTAATGCAGCAAGACCAGAATGTGAAAAAAACAACGGGCAGTGCAA
Seq A exon
ATGCAAACCAGGAATAAGAGGACGACAGTGTGATCGGTGTGCTCCAGGTACTTATGATTTCCCGAACTGCATACCATGTAAATGTAACAGAGATGGAACTGAACCAGATGTTTGTGATCCTCAGACAGGAATTTGTCTCTGCAAG
Seq C2 exon
GAGAATGTTGAAGGTGCAGAATGTGATATTTGCCGACCCGGATCATTTTATCTGGACCCTTCTAATCCCAAGGGATGCACCACTTGTTTTTGTTTTGGGGTAACAAGCAGCTGTCGCAGCACAAATCGTCGTCGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'36-37,'36-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(6.1=4.3),PF0005319=Laminin_EGF=PU(46.9=33.3)
A:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
C2:
PF0005319=Laminin_EGF=PD(51.0=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCCTCGAACTGTGAAAC
R:
AACAAGTGGTGCATCCCTTGG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]