RnoEX6058078 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3841131-3850158:+
Coord C1 exon
chr18:3841131-3841335
Coord A exon
chr18:3849448-3849592
Coord C2 exon
chr18:3850018-3850158
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTTCCTCTATCCCTGTACAGGTG
3' ss Score
10.54
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTTGTAATTGTGGCAGACGCCTTTGCGAGGAGGTGACAGGGAAGTGTCTCTGCCCACCCAACACAGTCAGGCCCCAGTGTGAGGTCTGCGAGATGAATTCCTTCAACTTCCACCCTGTGGCTGGCTGTGAAGTCTGCAACTGCTCCAGGAAGGGCACCGTTGAGGCAGCCGTCTCTGAGTGTGACAGGGACAGCGGGCAGTGCAG
Seq A exon
GTGCAAGCCTAGAGTCACGGGGCAGCAGTGTGACAAGTGTGCTCCTGGCTTCTACCACTTCCCTGAGTGTGTCCCCTGCAGCTGTAACAGAGATGGGACTGAGCCCGGAGTATGCGACCCAGGGACTGGGGCTTGCATGTGCAAG
Seq C2 exon
GAAAATGTGGAGGGCCCCCAGTGTCAATTTTGTCGAGAAGGATCATTCTACCTGGACTCCGCCAACCCAGAGGGTTGTACCAGGTGCTTCTGTTTCGGAGTGAATACTGACTGTCGGAGTTCACACAAGCGAAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'41-37,'41-36,44-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(6.1=4.3),PF0005319=Laminin_EGF=PU(46.9=33.3)
A:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
C2:
PF0005319=Laminin_EGF=PD(51.0=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGACAGGGAAGTGTCT
R:
TTGGCGGAGTCCAGGTAGAAT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]