BtaEX6093068 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1821132-1836510:-
Coord C1 exon
chr22:1836429-1836510
Coord A exon
chr22:1828127-1828273
Coord C2 exon
chr22:1821132-1821270
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGAACGTCTTACCAGGCC
3' ss Score
6.3
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGTCCTGATGAAGAAGCTGTTGTGGATCTTGGCAAAACCAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAGA
Seq A exon
GCCATCGAGCTGTGTACATCGGCGTTCACGTCCCGTTTAGTAAAGAGAGTCGCCGGCGTCACAGGCATCGCGGACACAAACATCACCACCGGAGGAGGAAAGACAAGGACTCGGACAGAGAGGACGGACGGGAGTCTCCTTCTTACG
Seq C2 exon
ACACGCCATCCCAGAGAGTCCAGTTCATCCTCGGCACTGAGGACGATGACGAGGAGCACATCCCCCACGACCTCTTCACGGAGATGGACGAGCTCTGCTACAGAGACGGAGAGGAGTACGAATGGAAGGAAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'6-7,'6-4,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.732 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTGATGAAGAAGCTGTTGT
R:
TGGCAGTTTCCTTCCATTCGT
Band lengths:
220-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]