DreEX6042450 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42830850-42845062:-
Coord C1 exon
chr16:42844981-42845062
Coord A exon
chr16:42831082-42831225
Coord C2 exon
chr16:42830850-42830988
Length
144 bp
Sequences
Splice sites
3' ss Seq
TAATGTCTTTCTCTTTACAGGTC
3' ss Score
12.17
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCAATGATGATGAAGCTGTTGTTGACCAGGGGAAAACCAGCTCTAACATTCACACAAACTTTGAAAAAGAGGAACTAGAAA
Seq A exon
GTCACAGAGCAGTTTATGTTGGCGTACATGTACCTTTAGGAAGACAAAGCAGAAGGAGACACCGCCACCGTGGTCATAAGCACCATCGGAAAAGGAAAGACAGATGCTCTGAGCGAGAGGACGGCAGAGATTCACCAACGTACG
Seq C2 exon
ACACTCCTTCACAGAGGGTCCAGTTTATCCTCGGCACTGAGGATGATGACGAGGAGCACATTCCTCATGACCTCTTCACTGAGCTTGACGAGCTGTGCTTCCGCGATGGACTCACTTGTGAGTGGAAAGAGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.917 C2=0.362
Domain overlap (PFAM):
C1:
PF079317=CPT=FE(25.2=100)
A:
PF079317=CPT=PD(39.3=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATGATGATGAAGCTGTTGT
R:
GGCTGTCTCTTTCCACTCACA
Band lengths:
219-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]