GgaEX1053613 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38474089-38486705:-
Coord C1 exon
chr2:38486624-38486705
Coord A exon
chr2:38475003-38475146
Coord C2 exon
chr2:38474089-38474224
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCTTGAACTTTCTTGACAGGCC
3' ss Score
8.67
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGTCATGATGAGGAAGCTGTCGTGGATATGGGCAAAATCAGCTCTACTATCAATACAAACTTTGAGAAAGAAGAACTAGAGA
Seq A exon
GCCACAGAGCTGTTTATATTGGCGTTCATGTCCCATTTGGAAAGCAGGGTCGTCGACGGCATAGACATCGTGGGCATAGACATCACAGAAGAAAAAAAGAAAAAGAAACTGATAGAGAAGATGGCAGAGAATCTCCATCGTACG
Seq C2 exon
ACACGCCATCCCAACGAGTGCAGTTTATCCTGGGTACTGAAGATGATGATGAACACATTCCTCATGATCTCTTCACTGAAATGGATGAACTTTGCTTCAGGGATGGAGAAGAGTATGAGTGGAAAGAAACTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'3-9,'3-8,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=0.694 C2=0.326
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATGATGAGGAAGCTGTCG
R:
CTAGCAGTTTCTTTCCACTCATACT
Band lengths:
218-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]