MmuEX6039656 @ mm9
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15561716-15570021:+
Coord C1 exon
chr14:15561716-15561797
Coord A exon
chr14:15566236-15566382
Coord C2 exon
chr14:15569883-15570021
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTTTAAAAACTTGAACTAGGTC
3' ss Score
4.59
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGTCCAGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAA
Seq A exon
GTCATCGAGCTGTATATGTTGGTGTTCATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAACATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATG
Seq C2 exon
ACACGCCATCGCAGAGGGTGCAGTTCATCCTCGGGACTGAAGACGACGATGAGGAGCACATTCCCCACGACCTCTTCACAGAGATGGATGAGCTCTGCTACAGAGACGGAGAAGAGTACGAGTGGAAGGAGACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.748 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGATGAAGAAGCTGTTGT
R:
GCCGTCTCCTTCCACTCGTA
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: