RnoEX6051273 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11884142-11890310:-
Coord C1 exon
chr15:11890229-11890310
Coord A exon
chr15:11888178-11888324
Coord C2 exon
chr15:11884142-11884280
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTTTAAAAACTTGAAATAGGTC
3' ss Score
4.47
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGTCCCGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACCGTGAACACCAAGTTTGAAAAAGAAGAATTAGAGA
Seq A exon
GTCATCGAGCTGTATATGTTGGTGTTCATGTACCGTTTAGTAAAGAGAGTCGTCGGCGTCACAGGCATCGAGGGCACAAACATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAGGAAGATGGACGGGAGTCTCCTTCTTATG
Seq C2 exon
ACACGCCATCGCAGAGGGTGCAGTTCATCCTTGGGACTGAAGACGATGATGAGGAGCACATTCCCCACGACCTCTTCACGGAGATGGACGAGCTCTGCTACCGAGACGGGGAAGAGTACGAGTGGAAAGAGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'4-5,'4-2,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.760 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000008759fB13738
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCGATGAAGAAGCTGTT
R:
CTGGCTGTCTCTTTCCACTCG
Band lengths:
221-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]