BtaEX6093070 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1817005-1821270:-
Coord C1 exon
chr22:1821132-1821270
Coord A exon
chr22:1820420-1820580
Coord C2 exon
chr22:1817005-1817193
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTATACATTATACATTTTAGATG
3' ss Score
5.62
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
ACACGCCATCCCAGAGAGTCCAGTTCATCCTCGGCACTGAGGACGATGACGAGGAGCACATCCCCCACGACCTCTTCACGGAGATGGACGAGCTCTGCTACAGAGACGGAGAGGAGTACGAATGGAAGGAAACTGCCAG
Seq A exon
ATGGCTGAAATTTGAAGAGGACGTTGAAGATGGTGGTGACCGGTGGAGTAAACCTTATGTGGCAACTCTTTCTTTACATAGTCTTTTTGAGCTAAGAAGTTGCATCTTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTCGATGAAATAGCAG
Seq C2 exon
ATATGGTACTGGACAACATGATCGCCTCTGGCCAGTTGGACGAGTCCATCAGAGAGAATGTCAGAGAAGCCCTTCTAAAGAGGCACCACCATCAGAATGAGAAGAGGTTCACCAGCCGGATCCCCCTAGTTCGTTCTTTTGCAGACATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'12-9,'12-8,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.000 C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(17.5=85.5)
C2:
PF075658=Band_3_cyto=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCATCCTCGGCACTGAG
R:
AGAACGAACTAGGGGGATCCG
Band lengths:
256-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]