GgaEX1053615 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39054159-39057660:-
Coord C1 exon
chr2:39057525-39057660
Coord A exon
chr2:39056385-39056545
Coord C2 exon
chr2:39054159-39054347
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTATTCGTTTCAGGTG
3' ss Score
9.74
5' ss Seq
CAGGTTGCA
5' ss Score
-3.12
Exon sequences
Seq C1 exon
ACACGCCATCCCAACGAGTGCAGTTTATCCTGGGTACTGAAGATGATGATGAACACATTCCTCATGATCTCTTCACTGAAATGGATGAACTTTGCTTCAGGGATGGAGAAGAGTATGAGTGGAAAGAAACTGCTAG
Seq A exon
GTGGCTAAAATTTGAAGAGGATGTTGAAGATGGTGGTGATCGTTGGAGCAAGCCTTATGTAGCAACTCTGTCTCTACACAGTCTCTTTGAATTGCGAAGCTGTATTCTTAATGGGACGGTCATGTTGGACATGAGAGCAAACACACTAGATGAGATAGCAG
Seq C2 exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAACGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_MULTIEX2-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(17.5=85.5)
C2:
PF075658=Band_3_cyto=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGCAGTTTATCCTGGGT
R:
ACCAAGGGAATCCGATTGCTG
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]