HsaEX0059846 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27475407-27479017:-
Coord C1 exon
chr3:27478879-27479017
Coord A exon
chr3:27477879-27478039
Coord C2 exon
chr3:27475407-27475595
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTATACATTATGCATTCAGATG
3' ss Score
5.24
5' ss Seq
CAGGTTATA
5' ss Score
1.5
Exon sequences
Seq C1 exon
ATACACCATCCCAGAGAGTTCAGTTTATCCTTGGTACTGAAGATGATGATGAAGAACATATTCCCCATGATCTCTTCACGGAAATGGATGAACTGTGTTACAGAGATGGAGAAGAATATGAATGGAAAGAAACTGCTAG
Seq A exon
ATGGCTGAAATTTGAAGAGGATGTTGAAGATGGCGGTGACCGATGGAGTAAACCTTATGTGGCAACTCTCTCTTTGCACAGTCTTTTTGAACTAAGGAGTTGCATCCTCAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTAGATGAAATAGCAG
Seq C2 exon
ATATGGTATTAGACAACATGATAGCTTCTGGCCAATTAGACGAGTCCATACGAGAGAATGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAGAATGAGAAAAGATTCACCAGTCGGATTCCTCTTGTTCGATCTTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(12.0=85.5)
C2:
PF075658=Band_3_cyto=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATGATCTCTTCACGGA
R:
AGCAAGTGAGGGTCAGAATGT
Band lengths:
256-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)