HsaEX6054818 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27477879-27490288:-
Coord C1 exon
chr3:27490142-27490288
Coord A exon
chr3:27478879-27479017
Coord C2 exon
chr3:27477879-27478039
Length
139 bp
Sequences
Splice sites
3' ss Seq
TAAATTCTTATTTTGTAAAGATA
3' ss Score
1.86
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTCATAGAGCTGTATATATTGGTGTTCACGTCCCGTTTAGTAAAGAGAGTCGTCGGCGTCATAGGCATCGCGGACACAAACATCACCACCGGAGAAGAAAAGATAAAGAATCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATG
Seq A exon
ATACACCATCCCAGAGAGTTCAGTTTATCCTTGGTACTGAAGATGATGATGAAGAACATATTCCCCATGATCTCTTCACGGAAATGGATGAACTGTGTTACAGAGATGGAGAAGAATATGAATGGAAAGAAACTGCTAG
Seq C2 exon
ATGGCTGAAATTTGAAGAGGATGTTGAAGATGGCGGTGACCGATGGAGTAAACCTTATGTGGCAACTCTCTCTTTGCACAGTCTTTTTGAACTAAGGAGTTGCATCCTCAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTAGATGAAATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=0.404 C2=0.000
Domain overlap (PFAM):
C1:
PF079317=CPT=FE(66.2=100)
A:
NO
C2:
PF075658=Band_3_cyto=PU(12.0=85.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGTCGTCGGCGTCATA
R:
GTGCTTGCTCTCATATCCAGCA
Band lengths:
249-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)