GgaEX1053614 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39046951-39058582:-
Coord C1 exon
chr2:39058439-39058582
Coord A exon
chr2:39057525-39057660
Coord C2 exon
chr2:39046951-39047066
Length
136 bp
Sequences
Splice sites
3' ss Seq
AGTTTCTCCTTTTCTTCAAGACA
3' ss Score
4.5
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GCCACAGAGCTGTTTATATTGGCGTTCATGTCCCATTTGGAAAGCAGGGTCGTCGACGGCATAGACATCGTGGGCATAGACATCACAGAAGAAAAAAAGAAAAAGAAACTGATAGAGAAGATGGCAGAGAATCTCCATCGTACG
Seq A exon
ACACGCCATCCCAACGAGTGCAGTTTATCCTGGGTACTGAAGATGATGATGAACACATTCCTCATGATCTCTTCACTGAAATGGATGAACTTTGCTTCAGGGATGGAGAAGAGTATGAGTGGAAAGAAACTGCTAG
Seq C2 exon
GGCTGTTAGCATCTCCTCAGTCAGCACCTGGAAATTTGGACAATGGGAAGAGTGGAGATGTTAAAGGTACTGGGACAGGTGGAAGCAGAGAAAACAGCACTGTTGATTTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_MULTIEX2-2/5=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=0.326 C2=0.785
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGAGCTGTTTATATTGGC
R:
GCTGTTTTCTCTGCTTCCACCT
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]