BtaEX6093069 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1820420-1828273:-
Coord C1 exon
chr22:1828127-1828273
Coord A exon
chr22:1821132-1821270
Coord C2 exon
chr22:1820420-1820580
Length
139 bp
Sequences
Splice sites
3' ss Seq
AAATTCTGATTTTTGTCAAGACA
3' ss Score
0.19
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
Exon sequences
Seq C1 exon
GCCATCGAGCTGTGTACATCGGCGTTCACGTCCCGTTTAGTAAAGAGAGTCGCCGGCGTCACAGGCATCGCGGACACAAACATCACCACCGGAGGAGGAAAGACAAGGACTCGGACAGAGAGGACGGACGGGAGTCTCCTTCTTACG
Seq A exon
ACACGCCATCCCAGAGAGTCCAGTTCATCCTCGGCACTGAGGACGATGACGAGGAGCACATCCCCCACGACCTCTTCACGGAGATGGACGAGCTCTGCTACAGAGACGGAGAGGAGTACGAATGGAAGGAAACTGCCAG
Seq C2 exon
ATGGCTGAAATTTGAAGAGGACGTTGAAGATGGTGGTGACCGGTGGAGTAAACCTTATGTGGCAACTCTTTCTTTACATAGTCTTTTTGAGCTAAGAAGTTGCATCTTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTCGATGAAATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'8-8,'8-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=0.404 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF075658=Band_3_cyto=PU(17.5=85.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTAAAGAGAGTCGCCGGCG
R:
GTGCTTGCTCTCATATCCAGCA
Band lengths:
254-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]